Detail of GM0053


Summary

The genetically modified enzybiotic, named LysgaYD36 , constructed by Truncation strategy, decrease the lytic activity.
With  LysgaYD36
  Sequence Length:  36 AA.
  Mass:  3831.2 Da.
  Isoelectric Point:  7.54
  Function:  has no lytic activity

Construction

GM0053, constructed by Truncation strategy.
    No schema construted on GM0053
Details:
GM0053[1-36]: derive from protein Q65YV6 sequence 1-36

Q65YV6, 310 AA., the Lysin from Lactobacillus phage phigaY

Source: Lactobacillus phage phigaY

Domains and repeats

4-209:  IPR013781, the Glycoside hydrolase, catalytic domain
235-305:  IPR003646, the SH3-like domain, bacterial-type

GO term prediction

Biological Process:  0005975, the carbohydrate metabolic process
Biological Process:  0009253, the peptidoglycan catabolic proces
Biological Process:  0016998, the peptidoglycan catabolic proces
Molecular Function:  0003796, the lysozyme activity


Linking to UniprotKB
Linging to InterPro

Annotation

1-36

1-206
: EAD, domain, derived from Lactobacillus gasseri JCM 1131T phage ??gaY endolysin,LysgaY;
217-310
: CBD, SH3bgaY domain, derived from Lactobacillus gasseri JCM 1131T phage ??gaY endolysin,LysgaY;
Domain and repeats:
GO term prediction:
MVEVAKRSYGVDVSSHNNGNYSGSKFAVVKVSEGLD
  BlastP to GMEnzy

Production

  1.  Expressed by pUC120 in E. coli NovaBlue(DE11),  Purified by His-bind kit (Novagen, Germany) and Sephacryl S-200 HR

Activity

    No activity data found on GM0053

Reference

  1. Sugahara, K.Yokoi, K. J.Nakamura, Y.Nishino, T.Yamakawa, A.Taketo, A.Kodaira, K.. (2007) Mutational and biochemical analyses of the endolysin Lys(gaY) encoded by the Lactobacillus gasseri JCM 1131T phage phi gaY. Gene. 00:41-52. [doi:10.1016/j.gene.2007.08.023] [PMID:17920212]
  2. Diaz, E.Lopez, R.Garcia, J. L.. (1991) Chimeric pneumococcal cell wall lytic enzymes reveal important physiological and evolutionary traits. Journal of biological chemistry. 09:5464-5471 [PMID:1672313]

Comments

    No comments found on GM0053


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