Record in detail


General Info

  • lamp_id:L05ADEF342
  • Name:Q32ZF6_RAT
  • FullName:
  • Source:Rattus norvegicus
  • Mass:8460.1 Da
  • Sequence Length:73 aa
  • Isoelectric Point:9.65
  • Activity:Antimicrobial
  • Sequence
        MKISCFLMLVLFLSCFQMNSGAGLDTMKCVRGKNNCHMHRCPWFFVLISTCYSGKGSCCQKRRWFTRSHVNNV
  • Function:null

Cross-Linking

  •   Cross-linking
  •   1  Database:DRAMP  DRAMP03450
  •   2  Database:Uniprot  Q32ZF6
  •   3  Database:DEF  DEF342

Top similar AMPs

  • Top similar AMPs on LAMP
  • 1. L05ADEF342    From 1 To 73 E-value: 3e-39 Score: 151
        MKISCFLMLVLFLSCFQMNSGAGLDTMKCVRGKNNCHMHRCPWFFVLISTCYSGKGSCCQKRRWFTRSHVNNV
  • 2. L03A000152    From 1 To 73 E-value: 9e-28 Score: 113
        MKISCFLLMIFFLSCFQINPVAVLDTIKCLQGNNNCHIQKCPWFLLQVSTCYKGKGRCCQKRRWFARSHVYHV
  • 3. L01A000720    From 1 To 50 E-value: 2e-18 Score: 82.8
        LDTIKCLQGNNNCHIQKCPWFLLQVSTCYKGKGRCCQKRRWFARSHVYHV
  • 4. L12A07933|    From 1 To 62 E-value: 3e-18 Score: 82.4
        MKISCFLLLILSLYFFQINQAIGPDTKKCVQRKNACHYFECPWLYYSVGTCYKGKGKCCQKR
  • 5. L05ADEF324    From 1 To 61 E-value: 0.000000000000001 Score: 73.6
        MKISCFLLLVLSLSCFQINPFAVLDTRVCIEKRNTCHILQCPLFRDVVGTCFEGIGKCCHK

Structure

  •   Domains
  •   1  Name:Defensin_beta-typ    Interpro Link:IPR001855
  •   Structures

        No structs found on LAMP database

Activity

  •   Antibacterial Activities

    •     No MICs found on LAMP database

Toxicity

  •   Toxicity

    •     No toxicity records found on LAMP database

Reference

  •   Reference
  •   [1]  Sodergren E.J.,Muzny D.M.,Metzker M.L.,Weinstock G.M.,Gibbs R.A.,
  •   Title:Genome sequence of the Brown Norway rat yields insights into mammalian evolution.
  •   Journal:Nature, 2004, 428, 493-521  [PubMed:15057822]
  •   [2]  Zhang G.,Blecha F.,Sang Y.,Cai Y.,Patil A.A.,
  •   Title:Cross-species analysis of the mammalian beta-defensin gene family: presence of syntenic gene clusters and preferential expression in the male reproductive tract.
  •   Journal:Physiol. Genomics, 2005, 23, 5-17  [PubMed:16033865]
  •   [3]  Yao A.,Turner R.,Miller J.,Di Francesco V.,Florea L.,
  •   Title:Gene and alternative splicing annotation with AIR.
  •   Journal:Genome Res., 2005, 15, 54-66  [PubMed:15632090]

Comments

  •   Comments

    •     No comments found on LAMP database



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