Record in detail


General Info

  • lamp_id:L06AT00042
  • Name:DEF06_ARATH
  • FullName:Defensin-like protein 6
  • Source:Arabidopsis thaliana
  • Mass:6153 Da
  • Sequence Length:54 aa
  • Isoelectric Point:8.6
  • Activity:Antimicrobial
  • Sequence
        EIIGGEGRTCQSKSHHFKYMCTSNHNCAIVCRNEGFSGGRCHGFHRRCYCTRLC
  • Function:Confers broad-spectrum resistance to pathogens.

Cross-Linking

Top similar AMPs

  • Top similar AMPs on LAMP
  • 1. L05ADEF287    From 20 To 73 E-value: 2e-27 Score: 112
        EIIGGEGRTCQSKSHHFKYMCTSNHNCAIVCRNEGFSGGRCHGFHRRCYCTRLC
  • 2. L06AT00042    From 1 To 54 E-value: 1e-26 Score: 110
        EIIGGEGRTCQSKSHHFKYMCTSNHNCAIVCRNEGFSGGRCHGFHRRCYCTRLC
  • 3. L12A10803|    From 1 To 47 E-value: 1e-22 Score: 96.7
        RTCQSKSHHFKYMCTSNHNCAIVCRNEGFSGGRCHGFHRRCYCTRLC
  • 4. L05ADEF281    From 29 To 77 E-value: 0.000000000000005 Score: 71.6
        EARTCESKSHRFKGPCVSTHNCANVCHNEGFGGGKCRGFRRRCYCTRHC
  • 5. L06AT00005    From 1 To 47 E-value: 0.00000000000006 Score: 68.2
        RVCESQSHGFKGACTGDHNCALVCRNEGFSGGNCRGFRRRCFCTLKC

Structure

  •   Domains
  •   1  Name:G_Purothionin    Interpro Link:IPR008177
  •   2  Name:Gamma-thionin    Interpro Link:IPR008176
  •   3  Name:Knot1    Interpro Link:IPR003614
  •   Structures

        No structs found on LAMP database

Activity

  •   Antibacterial Activities

    •     No MICs found on LAMP database

Toxicity

  •   Toxicity

    •     No toxicity records found on LAMP database

Reference

  •   Reference
  •   [1]  Asamizu E.,Kaneko T.,Nakamura Y.,Kotani H.,Sato S.,
  •   Title:Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6 Mb regions covered by twenty physically assigned P1 clones.
  •   Journal:DNA Res., 1997, 4, 215-230  [MEDLINE:97471969]
  •   [2]  Cock J.M.,Dumas C.,Miege C.,Vanoosthuyse V.,
  •   Title:Two large Arabidopsis thaliana gene families are homologous to the Brassica gene superfamily that encodes pollen coat proteins and the male component of the self-incompatibility response.
  •   Journal:Plant Mol. Biol., 2001, 46, 17-34  [MEDLINE:21330246]
  •   [3]  Thevissen K.,Cammue B.P.,Thomma B.P.H.J.,
  •   Title:Plant defensins.
  •   Journal:Planta, 2002, 216, 193-202  [PubMed:12447532]
  •   [4]  VandenBosch K.A.,Paape T.D.,Graham M.A.,Silverstein K.A.T.,
  •   Title:Genome organization of more than 300 defensin-like genes in Arabidopsis.
  •   Journal:Plant Physiol., 2005, 138, 600-610  [PubMed:15955924]

Comments

  •   Comments

    •     No comments found on LAMP database



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