Record in detail


General Info

  • lamp_id:L06AT00085
  • Name:Q5Z4S4_ORYSJ
  • FullName:
  • Source:Oryza sativa subsp. japonica
  • Mass:4796.4 Da
  • Sequence Length:45 aa
  • Isoelectric Point:8.62
  • Activity:Antimicrobial
  • Sequence
        KSCCPSTTARNVYNSCRFAGGSRNTCAKLSGCKIVDGNCEPPYVH
  • Function:null

Cross-Linking

Top similar AMPs

  • Top similar AMPs on LAMP
  • 1. L06AT00085    From 1 To 45 E-value: 8e-22 Score: 94
        KSCCPSTTARNVYNSCRFAGGSRNTCAKLSGCKIVDGNCEPPYVH
  • 2. L06AT00084    From 1 To 45 E-value: 6e-21 Score: 90.9
        KSCCPSTTARNVYNSCRFAGGSRDTCAKLSGCKIVDGNCKPPYVH
  • 3. L06AT00083    From 1 To 45 E-value: 2e-17 Score: 79.3
        KSCCPTTTARNIYNACRFAHGTRERCSKLSGCKIVDGKCKPPYIH
  • 4. L06AT00080    From 1 To 45 E-value: 2e-17 Score: 79.3
        KSCCPTTTARNIYNACRFALGTRERCSKLSGCKIVDGKCKPPYIH
  • 5. L06AT00079    From 1 To 45 E-value: 3e-17 Score: 79
        KSCCPSTTARNIYNSCRFTGASRDKCCKISGCKIVDGKCKPPFIH

Structure

  •   Domains
  •   1  Name:Thionin    Interpro Link:IPR001010
  •   Structures

        No structs found on LAMP database

Activity

  •   Antibacterial Activities

    •     No MICs found on LAMP database

Toxicity

  •   Toxicity

    •     No toxicity records found on LAMP database

Reference

  •   Reference
  •   [1]  
  •   Title:Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
  •   Journal:Science, 2003, 301, 376-379  [MEDLINE:22752273]
  •   [2]  
  •   Title:The map-based sequence of the rice genome.
  •   Journal:Nature, 2005, 436, 793-800  [PubMed:16100779]
  •   [3]  
  •   Title:The map-based sequence of the rice genome.
  •   Journal:Nature, 2005, 436, 793-800  [PubMed:16100779]
  •   [4]  Yamaguchi K.,Shigemoto Y.,Sakai H.,Tanaka T.,Ohyanagi H.,
  •   Title:The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.
  •   Journal:Nucleic Acids Res., 2006, 34, 0-0  [PubMed:16381971]
  •   [5]  Fujii Y.,Yamasaki C.,Barrero R.A.,Tanaka T.,Itoh T.,
  •   Title:Curated Genome Annotation of Oryza sativa ssp. japonica and Comparative Genome Analysis with Arabidopsis thaliana.
  •   Journal:Genome Res., 2007, 17, 175-183  [:]
  •   [6]  
  •   Title:The rice annotation project database (RAP-DB): 2008 update.
  •   Journal:Nucleic Acids Res., 2008, 36, 0-0  [PubMed:18089549]
  •   [7]  
  •   Title:The rice annotation project database (RAP-DB): 2008 update.
  •   Journal:Nucleic Acids Res., 2008, 36, 0-0  [PubMed:18089549]

Comments

  •   Comments

    •     No comments found on LAMP database



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