Record in detail


General Info

  • lamp_id:L06AT00218
  • Name:VODM_VIOOD
  • FullName:Vodo peptide M
  • Source:Viola odorata
  • Mass:3101.5 Da
  • Sequence Length:29 aa
  • Isoelectric Point:7.73
  • Activity:Antimicrobial
  • Sequence
        GAPICGESCFTGKCYTVQCSCSWPVCTRN
  • Function:Probably participates in a plant defense mechanism.

Cross-Linking

Top similar AMPs

  • Top similar AMPs on LAMP
  • 1. L06AT00218    From 1 To 29 E-value: 0.000000000004 Score: 61.6
        GAPICGESCFTGKCYTVQCSCSWPVCTRN
  • 2. L11A002495    From 1 To 29 E-value: 0.00000003 Score: 48.9
        GLPVCGETCFTGSCYTPGCSCNWPVCNRN
  • 3. L01A003084    From 1 To 29 E-value: 0.00000004 Score: 48.5
        GVPICGETCTLGTCYTAGCSCSWPVCTRN
  • 4. L02A001073    From 1 To 29 E-value: 0.00000005 Score: 48.1
        GLPVCGETCVTGSCYTPGCTCSWPVCTRN
  • 5. L02A001114    From 1 To 29 E-value: 0.00000007 Score: 47.8
        GLPVCGESCFGGSCYTPGCSCTWPICTRD

Structure

  •   Domains
  •   1  Name:Cyclotide    Interpro Link:IPR005535
  •   2  Name:Cyclotide_moebius_CS    Interpro Link:IPR012324
  •   3  Name:Cyclotide_subgr    Interpro Link:IPR017307
  •   Structures

Activity

  •   Antibacterial Activities

    •     No MICs found on LAMP database

Toxicity

  •   Toxicity

    •     No toxicity records found on LAMP database

Reference

  •   Reference
  •   [1]  Backlund A.,Verma C.,Smith D.,Goransson U.,Svangard E.,
  •   Title:Primary and 3-D modelled structures of two cyclotides from Viola odorata.
  •   Journal:Phytochemistry, 2003, 64, 135-142  [PubMed:12946412]
  •   [2]  Craik D.J.,Colgrave M.L.,Ireland D.C.,
  •   Title:A novel suite of cyclotides from Viola odorata: sequence variation and the implications for structure, function and stability.
  •   Journal:Biochem. J., 2006, 400, 1-12  [PubMed:16872274]

Comments

  •   Comments

    •     No comments found on LAMP database



CAPTCHA Image   Reload Image
Enter Code*: